STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1968PFAM: Type 4 fimbrial biogenesis protein PilX, N-terminal domain; KEGG: hypothetical protein. (776 aa)    
Predicted Functional Partners:
Bccel_3645
CheC, phosphatase, inhibitor of MCP methylation; KEGG: flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein, CheC domain protein.
    
 
 0.860
Bccel_3884
KEGG: flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS.
    
 
 0.702
Bccel_1969
Hypothetical protein.
       0.675
Bccel_1970
KEGG: hypothetical protein.
       0.657
Bccel_3631
PFAM: CheC domain protein; KEGG: chemotaxis protein CheC, inhibitor of MCP methylation.
    
   0.656
Bccel_1971
PFAM: Fimbrial assembly family protein; KEGG: fimbrial assembly family protein.
       0.463
Bccel_1972
Hypothetical protein.
       0.463
Bccel_1973
TIGRFAM: type IV pilus assembly protein PilM; PFAM: type IV pilus assembly protein PilM; KEGG: type IV pilus assembly protein PilM; SMART: cell division protein FtsA.
       0.442
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.426
Bccel_1967
KEGG: endonuclease IV; PFAM: Xylose isomerase domain-containing protein TIM barrel; SMART: AP endonuclease family 2.
       0.412
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.