STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1970KEGG: hypothetical protein. (455 aa)    
Predicted Functional Partners:
Bccel_3477
KEGG: Tfp pilus assembly protein PilN.
  
 
 0.935
Bccel_1973
TIGRFAM: type IV pilus assembly protein PilM; PFAM: type IV pilus assembly protein PilM; KEGG: type IV pilus assembly protein PilM; SMART: cell division protein FtsA.
  
 
 0.856
Bccel_1969
Hypothetical protein.
       0.818
Bccel_1976
PFAM: Type II secretion system F domain-containing protein; KEGG: type II secretion system protein.
   
 
 0.802
Bccel_1979
PFAM: type II secretion system protein E; KEGG: type II secretion system protein E.
  
 
 0.750
Bccel_1980
PFAM: General secretory system II protein E domain protein, type II secretion system protein E; KEGG: type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
  
 
 0.750
Bccel_1075
PFAM: Type II secretion system F domain-containing protein; KEGG: type II secretion system protein.
   
 
 0.724
Bccel_3480
PFAM: Type II secretion system F domain-containing protein; KEGG: type II secretion system protein.
   
 
 0.724
Bccel_1070
PFAM: type IV pilus assembly protein PilM; KEGG: Tfp pilus assembly protein, ATPase PilM.
  
 
 0.715
Bccel_2677
TIGRFAM: type IV pilus assembly protein PilM; PFAM: type IV pilus assembly protein PilM; KEGG: Competence protein A/Cell division protein FtsA; SMART: cell division protein FtsA.
  
 
 0.715
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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