Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bccel_1978KEGG: pilus retraction protein PilT. (143 aa)    
Predicted Functional Partners:
Bccel_1977
PFAM: type II secretion system protein E; KEGG: twitching motility protein.
     0.994
Bccel_1979
PFAM: type II secretion system protein E; KEGG: type II secretion system protein E.
  
 0.979
Bccel_1980
PFAM: General secretory system II protein E domain protein, type II secretion system protein E; KEGG: type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
  
 0.895
Bccel_1976
PFAM: Type II secretion system F domain-containing protein; KEGG: type II secretion system protein.
 
   
 0.868
Bccel_1974
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.821
Bccel_1973
TIGRFAM: type IV pilus assembly protein PilM; PFAM: type IV pilus assembly protein PilM; KEGG: type IV pilus assembly protein PilM; SMART: cell division protein FtsA.
 
   
 0.809
Bccel_1076
KEGG: type II secretion system protein E; PFAM: type II secretion system protein E, General secretory system II protein E domain protein; SMART: AAA ATPase.
  
 0.787
Bccel_3480
PFAM: Type II secretion system F domain-containing protein; KEGG: type II secretion system protein.
 
   
 0.784
Bccel_1075
PFAM: Type II secretion system F domain-containing protein; KEGG: type II secretion system protein.
 
   
 0.777
Bccel_3483
KEGG: type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: type II secretion system protein E, General secretory system II protein E domain protein; SMART: AAA ATPase.
 
  
 0.740
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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