Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_1982KEGG: HAD phosphatase subfamily IIIA; TIGRFAM: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668, hydrolase, HAD-superfamily, subfamily IIIA; PFAM: HAD-superfamily phosphatase subfamily IIIA. (196 aa)    
Predicted Functional Partners:
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
 
    0.937
Bccel_2238
Metal dependent phosphohydrolase; TIGRFAM: Conserved hypothetical protein CHP00488; PFAM: metal-dependent phosphohydrolase HD sub domain-containing protein; KEGG: metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region.
 
  
 0.691
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
    0.531
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
 
  
 0.521
Bccel_3723
TIGRFAM: RNA-binding, CRM domain-containing protein; PFAM: protein of unknown function UPF0044; KEGG: hypothetical protein; SMART: protein of unknown function UPF0044.
  
  
 0.487
Bccel_0674
PFAM: GTP1/OBG protein; KEGG: ribosome biogenesis GTP-binding protein YlqF.
 
  
 0.479
Bccel_2358
PFAM: Negative regulator of genetic competence; KEGG: negative regulator of genetic competence.
  
     0.465
Bccel_3745
Phosphotransferase system, phosphocarrier protein HPr; PFAM: phosphoryl transfer system HPr; KEGG: phosphoryl transfer system HPr.
 
     0.437
Bccel_2353
KEGG: rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD.
  
     0.409
Bccel_0675
Hypothetical protein; KEGG: ribosome biogenesis GTP-binding protein YlqF.
  
  
 0.403
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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