STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2000KEGG: peptidase S41; PFAM: peptidase S41, Tetratricopeptide TPR_1 repeat-containing protein; SMART: peptidase S41, Tetratricopeptide repeat-containing protein. (750 aa)    
Predicted Functional Partners:
Bccel_1137
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: hypothetical protein.
 
 0.977
Bccel_3709
PFAM: heat shock protein Hsp90; KEGG: Heat shock protein Hsp90-like protein.
  
 0.973
Bccel_1175
PFAM: Tetratricopeptide repeat-containing protein; KEGG: hypothetical protein.
 
 0.968
Bccel_4610
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS fold-4 domain protein, PAS fold-3 domain protein, response regulator receiver, Hpt domain protein; KEGG: signal transduction histidine kinase-like protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAC repeat-containing protein, GAF domain protein, PAS domain containing protein, response regulator receiver.
   
 0.951
Bccel_0610
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: hypothetical protein.
   
 0.950
Bccel_2067
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein; KEGG: PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein, PAS domain containing protein, histidine kinase A domain protein.
 
  
 0.944
alaS
Alanine-tRNA ligase, eukaryota/bacteria; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.943
Bccel_5061
KEGG: multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein, response regulator receiver, Hpt domain protein, histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, response regulator receiver.
   
 0.942
Bccel_1067
PFAM: N-terminal acetyltransferase A, auxiliary subunit, Tetratricopeptide repeat-containing protein; KEGG: Tetratricopeptide repeat family.
 
 
0.938
Bccel_1764
PFAM: Ankyrin repeat-containing domain-containing protein; KEGG: ankyrin.
 
 0.938
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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