STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2002Cellulase; KEGG: dockerin-like protein; PFAM: glycoside hydrolase family 9. (641 aa)    
Predicted Functional Partners:
Bccel_3489
Hypothetical protein; KEGG: fibronectin type III domain-containing protein.
  
 0.904
Bccel_4191
KEGG: glycoside hydrolase family protein; PFAM: glycoside hydrolase family 5, cellulose-binding family II; SMART: Carbohydrate binding domain CBM49, cellulose-binding family II.
 
  0.874
Bccel_0723
PFAM: glycoside hydrolase family 5; KEGG: glycoside hydrolase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 0.854
Bccel_0722
PFAM: lipolytic protein G-D-S-L family; KEGG: glycoside hydrolase family protein.
   
 0.828
Bccel_2462
PFAM: lipolytic protein G-D-S-L family; KEGG: glycoside hydrolase family protein.
   
0.828
Bccel_0386
PFAM: glycoside hydrolase family 5; KEGG: glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
0.819
Bccel_5508
Cellulase; KEGG: endoglucanase; PFAM: glycoside hydrolase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
0.807
Bccel_3093
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10, glycoside hydrolase family 11; KEGG: beta-1,4-xylanase; SMART: glycoside hydrolase family 10; Belongs to the glycosyl hydrolase 10 (cellulase F) family.
  
 
0.794
Bccel_3076
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10, Carbohydrate binding family 6, glycoside hydrolase family 11; KEGG: beta-1,4-xylanase; SMART: glycoside hydrolase family 10, cellulose binding type IV; Belongs to the glycosyl hydrolase 10 (cellulase F) family.
  
 
  
0.780
Bccel_1632
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10, glycoside hydrolase family 11, Carbohydrate binding family 6; KEGG: beta-1,4-xylanase; SMART: glycoside hydrolase family 10, cellulose binding type IV; Belongs to the glycosyl hydrolase 10 (cellulase F) family.
  
 
  
0.779
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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