STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2012KEGG: hypothetical protein; PFAM: protein of unknown function DUF187, cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin. (979 aa)    
Predicted Functional Partners:
Bccel_4535
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: rhomboid family protein.
  
   0.755
Bccel_5205
PFAM: Peptidase S54, rhomboid domain, Tetratricopeptide repeat-containing protein; KEGG: peptidase S9 prolyl oligopeptidase active site domain-containing protein.
  
   0.755
Bccel_1049
PFAM: Domain of unknown function DUF4367.
    
   0.727
Bccel_3397
KEGG: peptidoglycan N-acetylglucosamine deacetylase; PFAM: polysaccharide deacetylase, glycoside hydrolase family 18; SMART: chitinase II.
 
  
 0.702
Bccel_2569
KEGG: hypothetical protein.
  
   0.686
Bccel_1137
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: hypothetical protein.
  
 
 0.642
Bccel_1175
PFAM: Tetratricopeptide repeat-containing protein; KEGG: hypothetical protein.
  
 
 0.642
Bccel_4456
KEGG: tetratricopeptide repeat protein,DnaJ-like protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat-containing protein.
 
 
 0.595
Bccel_4013
KEGG: hypothetical protein.
  
 0.585
Bccel_5155
PFAM: Anti-sigma factor RsgI, N-terminal; KEGG: hypothetical protein.
  
 0.585
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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