Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_2012KEGG: hypothetical protein; PFAM: protein of unknown function DUF187, cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin. (979 aa)    
Predicted Functional Partners:
Bccel_2299
PFAM: Peptidase M23; KEGG: peptidase M23B.
   
 
 0.671
Bccel_4535
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: rhomboid family protein.
   
   0.654
Bccel_5205
PFAM: Peptidase S54, rhomboid domain, Tetratricopeptide repeat-containing protein; KEGG: peptidase S9 prolyl oligopeptidase active site domain-containing protein.
   
   0.654
Bccel_3397
KEGG: peptidoglycan N-acetylglucosamine deacetylase; PFAM: polysaccharide deacetylase, glycoside hydrolase family 18; SMART: chitinase II.
 
   
 0.651
Bccel_0337
KEGG: NLP/P60 protein; PFAM: NLP/P60 protein, SH3 domain protein; SMART: SH3 domain protein.
    
 0.640
Bccel_1049
PFAM: Domain of unknown function DUF4367.
    
   0.622
Bccel_4013
KEGG: hypothetical protein.
  
 0.598
Bccel_5155
PFAM: Anti-sigma factor RsgI, N-terminal; KEGG: hypothetical protein.
  
 0.598
Bccel_2569
KEGG: hypothetical protein.
   
   0.572
Bccel_3529
KEGG: N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin, localization of periplasmic protein complexes, copper amine oxidase-like domain-containing protein; SMART: cell wall hydrolase/autolysin.
 
  
 
0.542
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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