STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2068Hypothetical protein; KEGG: anti-sigma regulatory factor. (76 aa)    
Predicted Functional Partners:
Bccel_5061
KEGG: multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein, response regulator receiver, Hpt domain protein, histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, response regulator receiver.
  
 
 0.892
Bccel_1557
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: anti-sigma-factor antagonist.
  
 0.880
Bccel_1558
Anti-sigma-factor antagonist for Sigma B; PFAM: RsbT co-antagonist protein RsbRD, N-terminal domain, Sulfate transporter/antisigma-factor antagonist STAS; KEGG: anti-anti-sigma regulatory factor.
  
 0.880
Bccel_2416
KEGG: anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
  
 0.880
Bccel_3577
PFAM: Golgi phosphoprotein 3; KEGG: hypothetical protein.
  
 0.880
Bccel_5659
KEGG: anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
  
 0.880
Bccel_4079
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: hypothetical protein.
  
 0.864
Bccel_5240
PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
  
 0.864
Bccel_3866
KEGG: anti-sigma F factor antagonist; TIGRFAM: anti-sigma F factor antagonist, anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.805
Bccel_2066
KEGG: response regulator receiver protein; PFAM: protein phosphatase 2C domain protein, response regulator receiver; SMART: response regulator receiver, protein phosphatase 2C domain protein.
  
 0.804
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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