STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2093PFAM: glycosyl transferase family 2; KEGG: epsJ2, putative glycosyltransferase EpsJ. (333 aa)    
Predicted Functional Partners:
Bccel_2091
PFAM: glycosyl transferase group 1; KEGG: hypothetical protein.
 
 
 0.728
Bccel_2097
PFAM: glycosyl transferase group 1; KEGG: epsF2, glycosyltransferase EpsF2.
 
 0.694
Bccel_3397
KEGG: peptidoglycan N-acetylglucosamine deacetylase; PFAM: polysaccharide deacetylase, glycoside hydrolase family 18; SMART: chitinase II.
 
 
0.688
Bccel_4927
Glucose-1-phosphate thymidylyltransferase; KEGG: nucleotidyltransferase; PFAM: Nucleotidyl transferase.
  
 
 0.672
Bccel_1637
PFAM: glycosyl transferase group 1; KEGG: group 1 glycosyl transferase.
 
 0.664
Bccel_1867
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.662
Bccel_2088
KEGG: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase.
 
 
 0.635
Bccel_2092
PFAM: polysaccharide biosynthesis protein; KEGG: hypothetical protein.
 
  
 0.582
Bccel_1010
Mannose-1-phosphate guanylyltransferase, Phosphoglucosamine mutase; KEGG: nucleotidyltransferase; PFAM: Nucleotidyl transferase, phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I, transferase hexapeptide repeat containing protein.
  
 0.579
Bccel_3822
PFAM: Nucleotidyl transferase; KEGG: Nucleoside-diphosphate-sugar pyrophosphorylase family protein.
  
 0.579
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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