STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2133Beta-mannosidase; KEGG: glycoside hydrolase family protein; PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich, glycoside hydrolase family 2 sugar binding protein; Belongs to the glycosyl hydrolase 2 family. (822 aa)    
Predicted Functional Partners:
Bccel_3125
Alpha-galactosidase; PFAM: Carbohydrate binding family 6, glycoside hydrolase clan GH-D; KEGG: family 6 carbohydrate binding protein; SMART: cellulose binding type IV.
 
 0.928
Bccel_1479
6-deoxyerythronolide-B synthase; PFAM: KR domain protein, acyl carrier protein familyprotein, Beta-ketoacyl synthase, Acyl transferase; KEGG: polyketide synthase family protein; SMART: Polyketide synthase, beta-ketoacyl synthase region-containing protein, Polyketide synthase/Fatty acid synthase, KR, Polyketide synthase, acyl transferase domain-containing protein.
  
 
 0.899
Bccel_2229
6-deoxyerythronolide-B synthase, 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Acyl transferase, Beta-ketoacyl synthase, KR domain protein, acyl carrier protein familyprotein; KEGG: polyketide synthase family protein; SMART: Polyketide synthase, beta-ketoacyl synthase region-containing protein, Polyketide synthase/Fatty acid synthase, KR, Polyketide synthase, acyl transferase domain-containing protein.
  
 
 0.899
Bccel_3083
KEGG: alpha-L-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein.
 
  
 0.872
Bccel_3422
Transcriptional regulator with cupin sensor, AraC family; PFAM: glycoside hydrolase family 39, Helix-turn-helix, AraC domain-containing protein, Cupin 2 conserved barrel domain protein; KEGG: AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC domain-containing protein.
 
  
 0.853
Bccel_0865
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.846
Bccel_4961
PFAM: PTS system Galactitol-specific IIC component; KEGG: phosphotransferase system, galactitol-specific IIC component.
  
  
 0.843
Bccel_3818
TIGRFAM: 1-phosphofructokinase; KEGG: 1-phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.834
xylA
PFAM: Xylose isomerase domain-containing protein TIM barrel; TIGRFAM: xylose isomerase; HAMAP : Xylose isomerase; KEGG: xylA2, xylose isomerase XylA; Belongs to the xylose isomerase family.
    
 0.808
Bccel_1299
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.808
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.