Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_2145KEGG: Site-specific recombinase; PFAM: Resolvase domain-containing protein, Recombinase zinc beta ribbon domain, Recombinase; SMART: Resolvase domain-containing protein. (540 aa)    
Predicted Functional Partners:
Bccel_2076
PFAM: Recombinase, Resolvase domain-containing protein; KEGG: recombinase family protein.
  
     0.775
Bccel_0028
KEGG: resolvase domain-containing protein; PFAM: Resolvase domain-containing protein, Recombinase; SMART: Resolvase domain-containing protein; overlaps another CDS with the same product name.
  
     0.765
Bccel_0141
KEGG: resolvase domain-containing protein; PFAM: Resolvase domain-containing protein, Recombinase, Recombinase zinc beta ribbon domain; SMART: Resolvase domain-containing protein.
  
     0.756
Bccel_0003
PFAM: Recombinase; KEGG: recombinase; overlaps another CDS with the same product name.
  
     0.751
Bccel_2589
TIGRFAM: stage V sporulation protein T, transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain-containing protein; KEGG: stage V sporulation protein T; SMART: SpoVT/AbrB domain-containing protein.
 
      0.615
Bccel_2146
KEGG: hypothetical protein.
       0.554
Bccel_4327
KEGG: DNA methylase; PFAM: DNA methylase N-4/N-6 domain protein, ParB domain protein nuclease; SMART: ParB domain protein nuclease; Belongs to the N(4)/N(6)-methyltransferase family.
 
   
 0.504
Bccel_5453
KEGG: SNF2 family protein.
 
     0.499
Bccel_4815
KEGG: SNF2 family protein; PFAM: SNF2-related protein, helicase domain-containing protein; SMART: DEAD-like helicase, helicase domain-containing protein.
 
     0.476
Bccel_3054
KEGG: SNF2 family protein; PFAM: SNF2-related protein, Protein of unknown function DUF3846, helicase domain-containing protein; SMART: DEAD-like helicase, helicase domain-containing protein.
 
     0.439
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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