Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_2148Hypothetical protein; KEGG: YdjC. (316 aa)    
Predicted Functional Partners:
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.726
Bccel_2291
KEGG: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; SMART: AAA ATPase.
    
  0.710
Bccel_1565
KEGG: IMP dehydrogenase/GMP reductase; PFAM: IMP dehydrogenase/GMP reductase, CBS domain containing protein.
    
  0.699
Bccel_2149
Hypothetical protein; KEGG: signal transduction histidine kinase.
  
    0.644
Bccel_2147
KEGG: helicase c2; PFAM: helicase c2; SMART: helicase c2.
       0.566
Bccel_2150
KEGG: signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
       0.541
Bccel_2151
KEGG: response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: response regulator receiver; SMART: response regulator receiver.
       0.521
Bccel_2152
ATP-dependent transcriptional regulator, MalT-like, LuxR family; KEGG: response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR.
       0.521
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
   
 
  0.491
Bccel_3070
PFAM: Uncharacterized protein family UPF0311; KEGG: cellulosome protein dockerin type I.
 
  
  0.483
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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