STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2169PFAM: Protein of unknown function DUF4291; KEGG: hypothetical protein. (71 aa)    
Predicted Functional Partners:
Bccel_2170
PFAM: Protein of unknown function DUF4291; KEGG: hypothetical protein.
 
     0.945
Bccel_2171
KEGG: hypothetical protein.
       0.727
Bccel_2168
PCRF domain protein; KEGG: peptide chain release factor 2; PFAM: PCRF domain protein; SMART: PCRF domain protein.
       0.648
Bccel_2166
Appr-1-p processing domain protein; KEGG: putative phosphatase, C-terminal domain of histone macro H2A1 like protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein.
 
     0.622
Bccel_0451
TIGRFAM: Polynucleotide kinase-phosphatase, bacterial; KEGG: polynucleotide 3'-phosphatase,polynucleotide 5'-hydroxyl-kinase,polynucleotide 2',3'-cyclic phosphate phosphodiesterase; PFAM: metallophosphoesterase.
  
     0.597
Bccel_2172
KEGG: 3-5 exonuclease eri-1; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease.
       0.583
Bccel_2173
Hypothetical protein; KEGG: elongation factor G.
       0.583
Bccel_0450
KEGG: 3' terminal RNA ribose 2'-O-methyltransferase Hen1; TIGRFAM: 3'-RNA ribose 2'-O-methyltransferase, Hen1, bacterial; PFAM: Hen1, N-terminal.
  
     0.539
Bccel_3542
KEGG: transcriptional regulator, crp/fnr family; PFAM: cyclic nucleotide-binding protein; SMART: cyclic nucleotide-binding protein.
  
     0.514
Bccel_1262
PFAM: lipolytic protein G-D-S-L family; KEGG: cellulose-binding family II protein.
  
     0.437
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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