STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2247PFAM: Auxin Efflux Carrier; KEGG: auxin efflux carrier family protein. (322 aa)    
Predicted Functional Partners:
Bccel_4663
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); PFAM: malic protein NAD-binding protein, malic protein domain protein; KEGG: malic enzyme; SMART: malic protein NAD-binding protein.
  
  
 0.870
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
       0.607
Bccel_0334
PFAM: S-layer domain-containing protein; KEGG: NLP/P60 protein.
    
  0.488
Bccel_2015
PFAM: glycerophosphoryl diester phosphodiesterase, S-layer domain-containing protein, protein of unknown function DUF1080; KEGG: glycerophosphoryl diester phosphodiesterase.
    
  0.488
Bccel_2452
PFAM: S-layer domain-containing protein; KEGG: S-layer protein.
  
     0.481
Bccel_1764
PFAM: Ankyrin repeat-containing domain-containing protein; KEGG: ankyrin.
   
 0.468
Bccel_2726
PFAM: Ankyrin repeat-containing domain-containing protein; KEGG: ankyrin repeat-containing protein.
   
 0.468
Bccel_2888
PFAM: Ankyrin repeat-containing domain-containing protein; KEGG: hypothetical protein.
   
 0.468
Bccel_4523
PFAM: Ankyrin repeat-containing domain-containing protein; KEGG: hypothetical protein.
   
 0.468
Bccel_3807
KEGG: hypothetical protein.
   
 0.467
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.