Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_2255KEGG: response regulator with putative antiterminator output domain; PFAM: ANTAR domain protein; SMART: ANTAR domain protein. (194 aa)    
Predicted Functional Partners:
Bccel_3275
TIGRFAM: uroporphyrin-III C-methyltransferase; KEGG: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrinogen III synthase HEM4, Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
  
 
 0.786
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
   
  
 0.696
Bccel_0457
PFAM: copper amine oxidase-like domain-containing protein.
  
 
 0.682
Bccel_3141
Hypothetical protein; KEGG: livK, high-affinity branched-chain amino acid ABC transporter systemsubstrate binding protein LivK.
  
 
 0.682
Bccel_5063
TIGRFAM: urea ABC transporter, urea binding protein; KEGG: urea ABC transporter substrate-binding protein.
  
 
 0.682
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
    0.584
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.493
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
    0.485
Bccel_2251
KEGG: NCAIR mutase-like protein; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; SMART: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase.
       0.462
Bccel_2252
PFAM: Domain of unknown function DUF2520-containing protein, oxidoreductase/dehydrogenase, Rossmann-like domain-containing protein; KEGG: NADP oxidoreductase, coenzyme F420-dependent.
       0.462
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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