STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2268PFAM: protein of unknown function DUF1113; KEGG: hypothetical protein. (136 aa)    
Predicted Functional Partners:
Bccel_1499
KEGG: hypothetical protein.
  
    0.720
Bccel_2266
KEGG: hypothetical protein.
       0.517
Bccel_2267
PFAM: Protein of unknown function DUF2233, periplasmic; KEGG: exopolysaccharide biosynthesis protein.
       0.517
Bccel_1801
KEGG: hypothetical protein.
  
     0.488
Bccel_4999
KEGG: protein possibly involved in post-translational modification of quorum-sensing peptides; PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B.
  
     0.480
Bccel_1802
KEGG: hypothetical protein.
  
     0.474
Bccel_1803
PFAM: Domain of unknown function DUF2220; KEGG: hypothetical protein.
  
     0.453
Bccel_0441
PFAM: WYL domain; KEGG: hypothetical protein; overlaps another CDS with the same product name.
  
     0.427
Bccel_1800
Hypothetical protein; KEGG: chromosome segregation ATPase.
  
     0.423
Bccel_0440
PFAM: WYL domain; KEGG: hypothetical protein; overlaps another CDS with the same product name.
  
     0.421
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.