STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2281PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, NADH dehydrogenase (ubiquinone) 24 kDa subunit, NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein, Soluble ligand binding domain-containing protein; KEGG: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein. (598 aa)    
Predicted Functional Partners:
Bccel_0985
Hydrogenase, Fe-only; SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein, iron hydrogenase small subunit; TIGRFAM: hydrogenase, Fe-only; KEGG: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein, iron hydrogenase small subunit, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein.
 
 0.999
Bccel_0987
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: NADH dehydrogenase (ubiquinone) 24 kDa subunit.
 0.999
Bccel_2280
TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein, NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein, iron hydrogenase small subunit, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; KEGG: hydrogenase, Fe-only; SMART: iron hydrogenase small subunit, NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein.
 0.999
Bccel_2284
TIGRFAM: NADH-quinone oxidoreductase, E subunit; KEGG: NADH-quinone oxidoreductase subunit E; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit.
 0.999
Bccel_4073
NADH dehydrogenase (quinone); KEGG: hymA, putative iron-only hydrogenase, electron-transferring subunit HymA; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit.
 0.999
Bccel_0982
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: NADH:ubiquinone oxidoreductase 24 kD subunit.
  
 0.998
Bccel_4070
Hydrogenase, Fe-only; SMART: iron hydrogenase small subunit, NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein; TIGRFAM: hydrogenase, Fe-only; KEGG: hymC, putative iron-only hydrogenase, catalytic subunit HymC; PFAM: hydrogenase large subunit domain protein, iron hydrogenase small subunit, NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 0.998
Bccel_4955
PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: NADH dehydrogenase (ubiquinone) 30 kDa subunit.
  
 0.997
Bccel_4958
NADH dehydrogenase (quinone); KEGG: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit; PFAM: NADH/Ubiquinone/plastoquinone (complex I), NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein.
  
 0.996
Bccel_2287
PFAM: hydrogenase large subunit domain protein, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein, Fe-S cluster domain protein; KEGG: iron only hydrogenase large subunit.
 
 
 0.995
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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