STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2296PFAM: ABC-type transporter, periplasmic subunit; KEGG: oligopeptide ABC transporter periplasmic protein. (535 aa)    
Predicted Functional Partners:
Bccel_5424
PFAM: ABC-type transporter, integral membrane subunit; KEGG: dipeptide/oligopeptide/nickel ABC transporter permease.
 
 0.993
Bccel_5423
PFAM: ABC-type transporter, integral membrane subunit; KEGG: dipeptide/oligopeptide/nickel ABC transporter permease.
 
 0.988
Bccel_5422
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related protein, Oligopeptide/dipeptide ABC transporter domain protein; KEGG: oligopeptide/dipeptide ABC transporter ATP-binding protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.982
Bccel_1726
PFAM: ABC-type transporter, periplasmic subunit; KEGG: dipeptide ABC transporter periplasmic protein.
 
 
0.891
Bccel_5425
PFAM: ABC-type transporter, periplasmic subunit; KEGG: dipeptide ABC transporter substrate-binding protein.
 
 
0.887
Bccel_5421
Nickel-transporting ATPase; PFAM: ABC transporter related protein; KEGG: dipeptide/oligopeptide/nickel ABC transporter ATPase; SMART: AAA ATPase.
  
  
  0.810
Bccel_2298
Two component transcriptional regulator, LuxR family; KEGG: response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: response regulator receiver, regulatory protein LuxR; SMART: response regulator receiver, regulatory protein LuxR.
  
    0.709
Bccel_2297
KEGG: signal transduction histidine kinase; PFAM: histidine kinase dimerization and phosphoacceptor region, ATP-binding region ATPase domain protein, Cache domain protein; SMART: ATP-binding region ATPase domain protein.
       0.701
Bccel_1053
KEGG: L-cystine transport system permease TcyL; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: ABC-type transporter, integral membrane subunit.
  
 
 0.475
Bccel_5088
KEGG: NLP/P60 protein; PFAM: NLP/P60 protein, SH3 domain protein; SMART: SH3 domain protein.
  
    0.448
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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