STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2336KEGG: lipoprotein. (262 aa)    
Predicted Functional Partners:
Bccel_2334
KEGG: two-component signal transduction sensor histidin kinase; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, histidine kinase HAMP region domain protein.
 
    0.920
alaS
Alanine-tRNA ligase, eukaryota/bacteria; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.917
Bccel_3709
PFAM: heat shock protein Hsp90; KEGG: Heat shock protein Hsp90-like protein.
  
 0.916
Bccel_3905
KEGG: regulatory protein MerR.
   
 0.915
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.889
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.860
Bccel_1081
Serine/threonine protein kinase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein, Tetratricopeptide repeat-containing protein, protein kinase; KEGG: hstK, serine/threonine kinase; SMART: GGDEF domain containing protein, serine/threonine protein kinase, Tetratricopeptide repeat-containing protein, GAF domain protein.
  
 
 0.825
dnaK
Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 0.800
Bccel_4457
PFAM: Heat shock protein 70; KEGG: molecular chaperone.
   
 0.800
Bccel_5599
PFAM: Heat shock protein 70; KEGG: hscC, chaperone protein HscC.
   
 0.800
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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