STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2358PFAM: Negative regulator of genetic competence; KEGG: negative regulator of genetic competence. (208 aa)    
Predicted Functional Partners:
Bccel_2325
KEGG: chaperone ATPase; PFAM: ATPase AAA-2 domain protein, Clp ATPase domain-containing protein, AAA ATPase central domain protein; SMART: Clp ATPase domain-containing protein, AAA ATPase; Belongs to the ClpA/ClpB family.
    
 
 0.814
Bccel_2372
PFAM: Clp domain protein; KEGG: ATP-dependent Clp protease ATP-binding subunit ClpA.
    
 
 0.814
Bccel_2373
ATPase AAA-2 domain protein; KEGG: ATP-dependent Clp protease ATP-binding protein ClpA; PFAM: ATPase AAA-2 domain protein, Clp ATPase domain-containing protein; SMART: Clp ATPase domain-containing protein, AAA ATPase; Belongs to the ClpA/ClpB family.
    
 
 0.814
clpB
ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
    
 
 0.814
Bccel_2742
KEGG: chaperone ATPase; PFAM: ATPase AAA-2 domain protein, AAA ATPase central domain protein, Clp ATPase domain-containing protein, UvrB/UvrC protein, Clp domain protein; SMART: Clp ATPase domain-containing protein, AAA ATPase; Belongs to the ClpA/ClpB family.
    
 
 0.814
Bccel_4365
TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein, Clp ATPase domain-containing protein, AAA ATPase central domain protein; KEGG: ATP-dependent chaperone ClpB; SMART: Clp ATPase domain-containing protein, AAA ATPase; Belongs to the ClpA/ClpB family.
    
 
 0.814
Bccel_4366
PFAM: Clp domain protein; KEGG: ATP-dependent chaperone ClpB.
    
 
 0.814
Bccel_2963
KEGG: hypothetical protein.
    
 
 0.805
Bccel_3519
PFAM: Tetratricopeptide repeat-containing protein, Tetratricopeptide TPR_2 repeat-containing protein; KEGG: hypothetical protein.
  
     0.763
Bccel_3745
Phosphotransferase system, phosphocarrier protein HPr; PFAM: phosphoryl transfer system HPr; KEGG: phosphoryl transfer system HPr.
 
     0.700
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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