Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_2404PFAM: peptidase S16 lon domain protein; KEGG: putative ATP-dependent protease. (813 aa)    
Predicted Functional Partners:
Bccel_2405
KEGG: ribosomal-protein-alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase.
       0.585
Bccel_2406
Universal protein YeaZ; KEGG: hypothetical protein; TIGRFAM: universal protein YeaZ; PFAM: peptidase M22 glycoprotease.
       0.570
Bccel_2407
KEGG: YjeE family ATPase; TIGRFAM: Uncharacterized protein family UPF0079, ATPase; PFAM: Uncharacterized protein family UPF0079, ATPase.
       0.541
Bccel_2408
Hypothetical protein; KEGG: amidohydrolase.
       0.510
Bccel_5102
PFAM: Monogalactosyldiacylglycerol synthase, Glycosyltransferase 28 domain-containing protein; KEGG: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase.
   
    0.485
Bccel_3762
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.461
Bccel_4946
PFAM: 37kDa nucleoid-associated protein; KEGG: nucleoid-associated protein.
  
    0.425
Bccel_3878
TIGRFAM: pyruvate kinase; KEGG: pyruvate kinase; PFAM: Pyruvate kinase barrel, Pyruvate kinase -like protein, PEP-utilising protein mobile region; Belongs to the pyruvate kinase family.
  
    0.419
Bccel_2011
PFAM: ClpP/TepA; KEGG: peptidase S14 ClpP.
  
  
 0.409
Bccel_2403
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: diguanylate cyclase; SMART: GGDEF domain containing protein.
       0.408
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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