STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2417PFAM: heat shock protein DnaJ domain protein; KEGG: hypothetical protein. (288 aa)    
Predicted Functional Partners:
lysS
PFAM: tRNA synthetase class II (D K and N), nucleic acid binding OB-fold tRNA/helicase-type; TIGRFAM: lysyl-tRNA synthetase; HAMAP : Lysyl-tRNA synthetase; KEGG: lysyl-tRNA synthetase (class II); Belongs to the class-II aminoacyl-tRNA synthetase family.
     
 0.706
Bccel_2416
KEGG: anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
       0.587
Bccel_2414
KEGG: sigma-B/F/G subfamily RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily, RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein, sigma-70 region 3 domain protein, sigma-70 region 4 domain protein.
       0.586
Bccel_2415
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: anti-sigma regulatory factor.
       0.583
Bccel_1277
KEGG: NHL repeat-containing protein.
  
     0.579
Bccel_2706
KEGG: hypothetical protein.
  
     0.552
Bccel_0848
PFAM: S-layer domain-containing protein; KEGG: S-layer protein.
  
     0.544
Bccel_4199
PFAM: Lanthionine synthetase C family protein, Domain of unknown function DUF4135; KEGG: hypothetical protein.
  
     0.528
Bccel_4222
PFAM: Lanthionine synthetase C family protein; KEGG: Lanthionine synthetase C family protein.
  
     0.496
Bccel_1204
KEGG: NmrA family protein.
    
  0.495
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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