Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_2469PFAM: Vault protein inter-alpha-trypsin domain-containing protein; KEGG: hypothetical protein. (945 aa)    
Predicted Functional Partners:
Bccel_2470
KEGG: sugar transferase; TIGRFAM: Exosortase/Archaeosortase domain; PFAM: Exosortase EpsH-related protein.
       0.799
Bccel_2468
Hypothetical protein.
       0.664
Bccel_2471
Hypothetical protein; KEGG: beta-1,4-xylanase.
       0.450
Bccel_1219
PFAM: Rieske [2Fe-2S] iron-sulfur domain-containing protein; KEGG: glycine/D-amino acid oxidase, deaminating.
     
 0.410
Bccel_4608
PFAM: Alcohol dehydrogenase GroES domain protein, Alcohol dehydrogenase zinc-binding domain protein; KEGG: theronine dehydrogenase-like Zn-dependent dehydrogenase.
     
 0.410
Bccel_4142
PFAM: condensation domain protein, Alcohol acetyltransferase; KEGG: hypothetical protein.
    
  0.407
Bccel_0450
KEGG: 3' terminal RNA ribose 2'-O-methyltransferase Hen1; TIGRFAM: 3'-RNA ribose 2'-O-methyltransferase, Hen1, bacterial; PFAM: Hen1, N-terminal.
    
 0.402
Bccel_1119
PFAM: Methyltransferase type 11; KEGG: hypothetical protein.
    
 0.402
Bccel_1492
Hypothetical protein; KEGG: methyltransferase.
    
 0.402
Bccel_1888
PFAM: Methyltransferase domain; KEGG: SAM dependent methyltransferase.
    
 0.402
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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