Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bccel_2473PFAM: transcriptional regulator PadR family protein; KEGG: transcriptional regulator. (113 aa)    
Predicted Functional Partners:
Bccel_2472
KEGG: hypothetical protein.
 
     0.949
Bccel_3940
PFAM: transcriptional regulator PadR family protein; KEGG: PadR-like family transcriptional regulator.
  
     0.772
Bccel_0935
PFAM: transcriptional regulator PadR family protein; KEGG: PadR family transcriptional regulator.
  
   
 0.640
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
       0.450
Bccel_0426
KEGG: cytidyltransferase-related domain-containing protein; TIGRFAM: cytidyltransferase-related domain protein; PFAM: Citrate lyase ligase domain protein.
   
    0.404
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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