STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2483PFAM: coagulation factor 5/8 type domain protein; KEGG: coagulation factor 5/8 type domain-containing protein. (660 aa)    
Predicted Functional Partners:
Bccel_1262
PFAM: lipolytic protein G-D-S-L family; KEGG: cellulose-binding family II protein.
 
 0.855
Bccel_3489
Hypothetical protein; KEGG: fibronectin type III domain-containing protein.
 
 0.661
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.650
Bccel_1565
KEGG: IMP dehydrogenase/GMP reductase; PFAM: IMP dehydrogenase/GMP reductase, CBS domain containing protein.
    
  0.620
cinA
Competence-damaged protein; SMART: molybdopterin binding domain-containing protein; TIGRFAM: competence/damage-inducible protein CinA, CinA domain protein, molybdenum cofactor synthesis domain protein; KEGG: competence/damage-inducible protein CinA; HAMAP : Competence-damaged protein; PFAM: CinA domain protein, molybdopterin binding domain-containing protein.
    
  0.592
Bccel_5619
KEGG: G-D-S-L lipolytic protein.
  
 0.560
Bccel_5620
PFAM: lipolytic protein G-D-S-L family; KEGG: G-D-S-L lipolytic protein.
  
 0.560
Bccel_5621
KEGG: G-D-S-L lipolytic protein.
  
 0.560
Bccel_0722
PFAM: lipolytic protein G-D-S-L family; KEGG: glycoside hydrolase family protein.
   
 0.558
Bccel_0723
PFAM: glycoside hydrolase family 5; KEGG: glycoside hydrolase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 0.558
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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