STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2765KEGG: serine/threonine protein kinase; PFAM: protein kinase; SMART: serine/threonine protein kinase. (300 aa)    
Predicted Functional Partners:
Bccel_0331
SMART: protein phosphatase 2C domain protein; KEGG: protein serine/threonine phosphatase.
 
 0.925
Bccel_3404
KEGG: protein serine/threonine phosphatase; PFAM: protein phosphatase 2C domain protein; SMART: protein phosphatase 2C domain protein.
 
 0.925
Bccel_5745
SMART: protein phosphatase 2C domain protein; KEGG: protein phosphatase 2C.
 
 0.923
Bccel_1081
Serine/threonine protein kinase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein, Tetratricopeptide repeat-containing protein, protein kinase; KEGG: hstK, serine/threonine kinase; SMART: GGDEF domain containing protein, serine/threonine protein kinase, Tetratricopeptide repeat-containing protein, GAF domain protein.
 
 
 0.824
Bccel_4610
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS fold-4 domain protein, PAS fold-3 domain protein, response regulator receiver, Hpt domain protein; KEGG: signal transduction histidine kinase-like protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAC repeat-containing protein, GAF domain protein, PAS domain containing protein, response regulator receiver.
   
 0.795
Bccel_5735
KEGG: hypothetical protein; PFAM: protein kinase; SMART: serine/threonine protein kinase.
  
     0.774
Bccel_2764
Hypothetical protein.
       0.773
Bccel_5061
KEGG: multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein, response regulator receiver, Hpt domain protein, histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, response regulator receiver.
   
 0.753
Bccel_5746
KEGG: serine/threonine protein phosphatase.
 
 0.740
Bccel_5263
KEGG: FHA domain-containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein.
 
 
 
 0.731
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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