Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_2803PFAM: Sporulation protein YtfJ; KEGG: hypothetical protein. (144 aa)    
Predicted Functional Partners:
Bccel_0157
PFAM: Protein of unknown function DUF2953; KEGG: hypothetical protein.
 
     0.748
Bccel_0314
PFAM: Protein of unknown function DUF2953; KEGG: hypothetical protein.
  
    0.573
Bccel_2802
KEGG: hypothetical protein.
       0.536
Bccel_4108
KEGG: spore germination protein, amino acid permease; TIGRFAM: spore germination protein; PFAM: Spore germination protein.
  
     0.517
Bccel_4100
KEGG: spore germination protein; TIGRFAM: spore germination protein; PFAM: Spore germination protein.
  
     0.515
Bccel_4389
Anti-sigma H sporulation factor, LonB; SMART: AAA ATPase; TIGRFAM: ATP-dependent protease LonB; KEGG: ATP-dependent protease LonB; PFAM: peptidase S16 lon domain protein, AAA ATPase central domain protein.
  
    0.513
Bccel_2804
Metal sensitive transcriptional repressor; PFAM: protein of unknown function DUF156, Protein of unknown function, YojJ; KEGG: hypothetical protein.
     
 0.506
Bccel_4109
KEGG: Ger(x)C family germination protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
  
     0.490
Bccel_2453
TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; KEGG: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane.
  
     0.455
Bccel_1277
KEGG: NHL repeat-containing protein.
  
     0.452
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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