Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bccel_2858KEGG: hypothetical protein. (220 aa)    
Predicted Functional Partners:
Bccel_0424
KEGG: hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02452; PFAM: Protein of unknown function DUF2263.
  
     0.666
Bccel_1125
KEGG: hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02464; PFAM: Conserved hypothetical protein CHP02464.
 
     0.606
Bccel_0736
KEGG: hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02464; PFAM: Conserved hypothetical protein CHP02464.
 
     0.597
Bccel_3806
KEGG: pectate lyase; PFAM: Pectate lyase.
  
     0.434
Bccel_4970
PFAM: Protein of unknown function DUF4272; KEGG: hypothetical protein.
  
     0.430
Bccel_2166
Appr-1-p processing domain protein; KEGG: putative phosphatase, C-terminal domain of histone macro H2A1 like protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein.
  
     0.420
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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