STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2886SMART: LamG domain protein jellyroll fold domain protein; KEGG: LamG domain-containing protein. (364 aa)    
Predicted Functional Partners:
Bccel_3489
Hypothetical protein; KEGG: fibronectin type III domain-containing protein.
  
 
  0.854
Bccel_0722
PFAM: lipolytic protein G-D-S-L family; KEGG: glycoside hydrolase family protein.
    
  0.813
Bccel_0723
PFAM: glycoside hydrolase family 5; KEGG: glycoside hydrolase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
  0.813
Bccel_2462
PFAM: lipolytic protein G-D-S-L family; KEGG: glycoside hydrolase family protein.
    
  0.813
Bccel_1262
PFAM: lipolytic protein G-D-S-L family; KEGG: cellulose-binding family II protein.
    
  0.730
Bccel_5402
Thermitase; KEGG: subtilisin-like serine protease; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin, cellulosome anchoring protein cohesin region, peptidase domain protein; Belongs to the peptidase S8 family.
 
 0.644
Bccel_3191
Thermitase; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin, cellulosome anchoring protein cohesin region; KEGG: subtilisin-like serine protease; SMART: Hedgehog/intein hint domain-containing protein; Belongs to the peptidase S8 family.
 
 0.630
Bccel_1793
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin, S-layer domain-containing protein; KEGG: subtilisin-like serine protease; Belongs to the peptidase S8 family.
 
 0.625
Bccel_4472
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: subtilisin-like serine protease.
 
 0.621
Bccel_4135
TIGRFAM: RHS repeat-associated core domain-containing protein, YD repeat protein; PFAM: Ig domain protein group 2 domain protein, YD repeat-containing protein, SH3 domain protein; KEGG: Rhs family protein; SMART: Ig domain protein group 2 domain protein, SH3 domain protein, Fibronectin type III domain protein, Hedgehog/intein hint domain-containing protein.
 
 0.612
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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