Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_2913KEGG: Resolvase domain-containing protein; PFAM: Resolvase domain-containing protein; SMART: Resolvase domain-containing protein. (192 aa)    
Predicted Functional Partners:
Bccel_0141
KEGG: resolvase domain-containing protein; PFAM: Resolvase domain-containing protein, Recombinase, Recombinase zinc beta ribbon domain; SMART: Resolvase domain-containing protein.
 
     0.674
Bccel_2955
PFAM: transposase Tn3 family protein, Domain of unknown function DUF4158; KEGG: transposase Tn3.
 
     0.668
Bccel_2852
PFAM: transposase Tn3 family protein, Domain of unknown function DUF4158; KEGG: tnpA, transposase.
 
     0.661
Bccel_2912
PFAM: transposase Tn3 family protein, Domain of unknown function DUF4158; KEGG: transposase Tn3 family protein.
 
     0.657
Bccel_2950
KEGG: ATP-binding protein.
 
     0.600
Bccel_2841
PFAM: transposase Tn3 family protein, Domain of unknown function DUF4158; KEGG: transposase.
 
     0.550
Bccel_2949
PFAM: Transposase-like Mu, Integrase catalytic region; KEGG: tnp, transposase.
 
   
 0.510
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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