STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3003TIGRFAM: cysteine desulfurase family protein; KEGG: Cysteine desulfurase; PFAM: aminotransferase class V. (385 aa)    
Predicted Functional Partners:
Bccel_1513
KEGG: FeS cluster assembly scaffold protein NifU; TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein.
  
 0.943
Bccel_4743
PFAM: nitrogen-fixing NifU domain protein; KEGG: hypothetical protein.
  
 0.943
Bccel_3006
PFAM: phosphoadenosine phosphosulfate reductase; KEGG: PUA-PAPS reductase like fusion.
  
 0.942
Bccel_3004
KEGG: hypothetical protein.
 
     0.940
Bccel_5434
Hypothetical protein; KEGG: NifU-like domain-containing protein.
  
 0.932
Bccel_3005
PFAM: Domain of unknown function DUF4007; KEGG: hypothetical protein.
 
     0.918
Bccel_2999
KEGG: hypothetical protein.
 
  
 0.912
Bccel_3001
KEGG: helicase domain-containing protein; PFAM: type III restriction protein res subunit, helicase domain-containing protein, Phospholipase D-like domain; SMART: DEAD-like helicase, helicase domain-containing protein.
 
     0.863
Bccel_2997
KEGG: RNA polymerase sigma-32 subunit RpoH; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein, sigma-70 region 2 domain protein.
 
     0.850
Bccel_2379
Thioredoxin-disulfide reductase; KEGG: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain.
 
 
 0.813
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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