STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3007Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: helix-turn-helix domain-containing protein. (69 aa)    
Predicted Functional Partners:
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
  0.759
Bccel_3006
PFAM: phosphoadenosine phosphosulfate reductase; KEGG: PUA-PAPS reductase like fusion.
 
     0.601
Bccel_1662
PFAM: Protein of unknown function DUF3036; KEGG: hypothetical protein.
 
    0.588
Bccel_3005
PFAM: Domain of unknown function DUF4007; KEGG: hypothetical protein.
       0.523
Bccel_2999
KEGG: hypothetical protein.
       0.480
Bccel_3001
KEGG: helicase domain-containing protein; PFAM: type III restriction protein res subunit, helicase domain-containing protein, Phospholipase D-like domain; SMART: DEAD-like helicase, helicase domain-containing protein.
       0.478
Bccel_3004
KEGG: hypothetical protein.
       0.472
Bccel_3008
Putative transcriptional regulator, GntR family; KEGG: hypothetical protein.
       0.467
metK
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
    
  0.466
Bccel_3003
TIGRFAM: cysteine desulfurase family protein; KEGG: Cysteine desulfurase; PFAM: aminotransferase class V.
       0.463
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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