Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3036PFAM: TRAG family protein; KEGG: TRAG family protein. (509 aa)    
Predicted Functional Partners:
Bccel_3037
KEGG: TRAG family protein.
      0.924
Bccel_3012
KEGG: hypothetical protein.
 
  
 0.832
Bccel_4773
KEGG: hypothetical protein.
 
  
 0.811
Bccel_3050
KEGG: hypothetical protein.
 
     0.801
Bccel_3052
PFAM: Domain of unknown function DUF3991; KEGG: zinc finger CHC2-family protein.
 
     0.799
Bccel_3025
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: hypothetical protein.
 
   
 0.780
Bccel_4814
PFAM: Domain of unknown function DUF3991; KEGG: zinc finger CHC2-family protein.
 
     0.774
Bccel_4809
KEGG: hypothetical protein.
 
     0.773
Bccel_5458
PFAM: Domain of unknown function DUF3991; KEGG: zinc finger CHC2-family protein.
 
     0.756
Bccel_3023
KEGG: hypothetical protein.
 
     0.742
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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