Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_3085PFAM: beta-lactamase; KEGG: penicillin-binding protein, beta-lactamase class C. (387 aa)    
Predicted Functional Partners:
Bccel_5313
Beta-N-acetylhexosaminidase; KEGG: anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase; PFAM: glycoside hydrolase family 3 domain protein.
 
 0.839
Bccel_1745
PFAM: beta-lactamase; KEGG: beta-lactamase.
 
     0.761
Bccel_2396
TIGRFAM: penicillin-binding protein, 1A family; KEGG: penicillin-binding protein; PFAM: glycosyl transferase family 51, penicillin-binding protein transpeptidase.
   
 
 0.753
Bccel_0300
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1, Penicillin-binding protein 5 domain protein; KEGG: serine-type D-Ala-D-Ala carboxypeptidase; SMART: Penicillin-binding protein 5 domain protein; Belongs to the peptidase S11 family.
     
 0.746
Bccel_2352
TIGRFAM: penicillin-binding protein 2; KEGG: peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase, Penicillin-binding protein dimerization domain-containing protein.
     
 0.739
Bccel_3086
Xylan 1,4-beta-xylosidase; KEGG: beta-xylosidase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.731
Bccel_1744
PFAM: beta-lactamase; KEGG: beta-lactamase.
 
     0.717
Bccel_3084
PFAM: Uncharacterized protein family UPF0311; KEGG: hypothetical protein.
       0.675
Bccel_3083
KEGG: alpha-L-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein.
 
     0.672
Bccel_0196
Putative PASTA sensor protein; PFAM: penicillin-binding protein transpeptidase, Penicillin-binding protein dimerization domain-containing protein, PASTA domain containing protein; KEGG: cell division protein FtsI/penicillin-binding protein 2; SMART: PASTA domain containing protein.
    
 0.652
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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