Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_3089PFAM: ABC-type transporter, integral membrane subunit; KEGG: carbohydrate ABC transporter membrane protein 2. (312 aa)    
Predicted Functional Partners:
Bccel_2622
Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter related protein, Transport-associated OB domain-containing protein; KEGG: sugar ABC transporter ATP-binding protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.986
Bccel_2007
PFAM: ABC-type transporter, integral membrane subunit; KEGG: carbohydrate ABC transporter membrane protein 1.
 
 0.980
Bccel_2129
PFAM: ABC-type transporter, integral membrane subunit; KEGG: sugar ABC transporter permease.
 
 0.980
Bccel_3088
PFAM: Domain of unknown function DUF3502; KEGG: carbohydrate ABC transporter substrate-binding protein.
 
 0.976
Bccel_3078
PFAM: extracellular solute-binding protein family 1; KEGG: extracellular solute-binding protein.
 
 0.955
Bccel_3090
PFAM: ABC-type transporter, integral membrane subunit; KEGG: ABC-type polysaccharide transport system, permease component.
 
 
 0.954
Bccel_0921
PFAM: Domain of unknown function DUF3502; KEGG: family 1 extracellular solute-binding protein.
 
 0.948
Bccel_0453
PFAM: extracellular solute-binding protein family 1; KEGG: sugar ABC transporter periplasmic protein.
 
 0.938
Bccel_3294
PFAM: extracellular solute-binding protein family 1; KEGG: sugar ABC transporter periplasmic protein.
 
 0.937
Bccel_2342
PFAM: extracellular solute-binding protein family 1; KEGG: family 1 extracellular solute-binding protein.
 
 0.934
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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