STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3095Alpha-N-arabinofuranosidase, Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10, glycoside hydrolase family 62, Carbohydrate binding family 6; KEGG: glycoside hydrolase; SMART: glycoside hydrolase family 10, cellulose binding type IV. (911 aa)    
Predicted Functional Partners:
Bccel_1712
Xylan 1,4-beta-xylosidase; KEGG: beta-xylosidase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
  
 0.868
Bccel_3115
PFAM: glycoside hydrolase family 43; KEGG: glycoside hydrolase; Belongs to the glycosyl hydrolase 43 family.
  
 0.866
Bccel_4966
Xylan 1,4-beta-xylosidase; KEGG: glycoside hydrolase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
  
 0.866
Bccel_0723
PFAM: glycoside hydrolase family 5; KEGG: glycoside hydrolase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.843
Bccel_3083
KEGG: alpha-L-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein.
 
  
 0.805
Bccel_4937
Mannan endo-1,4-beta-mannosidase; PFAM: Endoglucanase H/Glycosyl hydrolase family 26, Ricin B lectin; KEGG: mannan endo-1,4-beta-mannosidase; SMART: Ricin B lectin; Belongs to the glycosyl hydrolase 26 family.
 
  
 0.798
Bccel_1816
Cellulase; KEGG: glycoside hydrolase; PFAM: glycoside hydrolase family 9.
  
 
   0.791
Bccel_0857
KEGG: endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 11, Carbohydrate binding family 6; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.788
Bccel_3096
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: xylanase B; SMART: glycoside hydrolase family 10.
 
 
  
0.784
Bccel_5538
KEGG: hypothetical protein.
 
  
 0.780
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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