STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3105PFAM: ABC-type transporter, integral membrane subunit; KEGG: sugar ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (330 aa)    
Predicted Functional Partners:
Bccel_3104
PFAM: Periplasmic binding protein domain; KEGG: hypothetical protein.
 0.998
Bccel_3107
Monosaccharide-transporting ATPase; PFAM: ABC transporter related protein; KEGG: ABC transporter; SMART: AAA ATPase.
 0.997
Bccel_3732
PFAM: Periplasmic binding protein domain; KEGG: hypothetical protein.
 0.997
Bccel_3106
PFAM: ABC-type transporter, integral membrane subunit; KEGG: ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
  
 
0.992
Bccel_1395
Monosaccharide-transporting ATPase; PFAM: ABC transporter related protein; KEGG: sugar ABC transporter ATPase; SMART: AAA ATPase.
 0.988
Bccel_3108
PFAM: Periplasmic binding protein domain; KEGG: periplasmic protein precursor.
 
 0.983
Bccel_5503
PFAM: Periplasmic binding protein domain; KEGG: periplasmic binding protein/LacI transcriptional regulator.
 
 0.969
Bccel_5242
PFAM: Periplasmic binding protein domain; KEGG: xylose-binding protein.
  
 0.751
Bccel_3102
KEGG: AraC family transcriptional regulator; PFAM: response regulator receiver, Helix-turn-helix, AraC domain-containing protein; SMART: Helix-turn-helix, AraC domain-containing protein, response regulator receiver.
 
    0.746
Bccel_1397
KEGG: ABC-type xylose transport system, permease component.
 
  
  0.722
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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