STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3146PFAM: UbiA prenyltransferase; KEGG: 4-hydroxybenzoate octaprenyltransferase. (299 aa)    
Predicted Functional Partners:
Bccel_3150
PFAM: protein of unknown function DUF46; KEGG: CDP-diglyceride synthetase.
 
  
 0.987
Bccel_3144
KEGG: hypothetical protein.
 
    0.958
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
 0.939
Bccel_3145
PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding protein, PEP-utilising protein mobile region; KEGG: phosphoenolpyruvate synthase.
 
     0.931
Bccel_3148
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: phosphatidylserine synthase.
 
  
  0.925
atpE
ATP synthase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
    
  0.910
Bccel_3147
KEGG: psd, phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related protein; Belongs to the phosphatidylserine decarboxylase family.
 
   
 0.848
Bccel_3149
Pyruvate, water dikinase; KEGG: phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding protein, PEP-utilising protein mobile region.
 
     0.841
Bccel_1435
KEGG: hypothetical protein.
  
 
 0.838
Bccel_1479
6-deoxyerythronolide-B synthase; PFAM: KR domain protein, acyl carrier protein familyprotein, Beta-ketoacyl synthase, Acyl transferase; KEGG: polyketide synthase family protein; SMART: Polyketide synthase, beta-ketoacyl synthase region-containing protein, Polyketide synthase/Fatty acid synthase, KR, Polyketide synthase, acyl transferase domain-containing protein.
  
 
 0.779
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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