STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3150PFAM: protein of unknown function DUF46; KEGG: CDP-diglyceride synthetase. (190 aa)    
Predicted Functional Partners:
Bccel_3146
PFAM: UbiA prenyltransferase; KEGG: 4-hydroxybenzoate octaprenyltransferase.
 
  
 0.987
Bccel_3148
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: phosphatidylserine synthase.
 
  
  0.947
Bccel_3144
KEGG: hypothetical protein.
 
     0.936
Bccel_3145
PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding protein, PEP-utilising protein mobile region; KEGG: phosphoenolpyruvate synthase.
 
     0.909
Bccel_3149
Pyruvate, water dikinase; KEGG: phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding protein, PEP-utilising protein mobile region.
 
     0.858
Bccel_3147
KEGG: psd, phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related protein; Belongs to the phosphatidylserine decarboxylase family.
 
 
 
 0.849
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
    0.827
Bccel_1435
KEGG: hypothetical protein.
     
 0.661
Bccel_0553
KEGG: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 0.647
Bccel_1304
TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 0.647
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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