Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3207KEGG: hypothetical protein. (259 aa)    
Predicted Functional Partners:
Bccel_3649
KEGG: flagellar hook-basal body protein; TIGRFAM: flagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein, flagellar basal body FlaE domain protein, flagellar basal body rod protein.
   
 0.814
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
 0.794
Bccel_1565
KEGG: IMP dehydrogenase/GMP reductase; PFAM: IMP dehydrogenase/GMP reductase, CBS domain containing protein.
    
 0.759
Bccel_3658
KEGG: flagellar M-ring protein FliF; TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein, Flagellar M-ring domain protein.
   
 
 0.714
Bccel_1914
KEGG: hypothetical protein.
  
 0.704
Bccel_3111
PFAM: WD40-like beta Propeller containing protein; KEGG: hypothetical protein.
  
 0.704
Bccel_5162
PFAM: WD40-like beta Propeller containing protein; KEGG: hypothetical protein.
  
 0.704
Bccel_5468
PFAM: WD40-like beta Propeller containing protein; KEGG: hypothetical protein.
  
 0.704
Bccel_3660
KEGG: flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein, flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
   
 
 0.692
Bccel_3905
KEGG: regulatory protein MerR.
   
   0.661
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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