STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3259PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (338 aa)    
Predicted Functional Partners:
Bccel_3258
Methyltransferase cognate corrinoid protein; SMART: Methionine synthase B12-binding module cap domain protein; TIGRFAM: methyltransferase cognate corrinoid protein; KEGG: methyltransferase cognate corrinoid protein; PFAM: cobalamin B12-binding domain protein, Methionine synthase B12-binding module cap domain protein.
 
 0.983
Bccel_3252
PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: hypothetical protein.
 
  
  0.956
Bccel_3275
TIGRFAM: uroporphyrin-III C-methyltransferase; KEGG: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrinogen III synthase HEM4, Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
  
 
 0.928
Bccel_3848
PFAM: amine oxidase; KEGG: amine oxidase.
  
 
 0.920
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 0.894
Bccel_0927
KEGG: hypothetical protein.
  
 
 0.849
Bccel_3490
KEGG: glutamate synthase family protein; PFAM: ferredoxin-dependent glutamate synthase, glutamine amidotransferase class-II, glutamate synthase alpha subunit domain protein, glutamate synthase.
    
 0.824
Bccel_3380
Coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Coproporphyrinogen III oxidase; KEGG: coproporphyrinogen dehydrogenase; PFAM: Radical SAM domain protein.
  
 
 0.796
Bccel_3254
Hypothetical protein; KEGG: ferredoxin.
 
    0.766
Bccel_2062
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
 
 0.747
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.