STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3275TIGRFAM: uroporphyrin-III C-methyltransferase; KEGG: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrinogen III synthase HEM4, Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase. (507 aa)    
Predicted Functional Partners:
Bccel_3274
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: Porphobilinogen synthase; SMART: delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 0.999
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 0.999
Bccel_3290
KEGG: siroheme synthase; TIGRFAM: siroheme synthase; PFAM: Siroheme synthase domain-containing protein.
 
 0.999
hemL
PFAM: aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; HAMAP : Glutamate-1-semialdehyde 2,1-aminomutase; KEGG: hemL, glutamate-1-semialdehyde aminotransferase.
 
 
 0.991
Bccel_3272
PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: cobalamin (vitamin B12) biosynthesis CbiX protein.
  
 
 0.987
Bccel_3278
TIGRFAM: precorrin-3B C17-methyltransferase; KEGG: precorrin-3B C(17)-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
 
0.986
hemA
Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
  
 0.985
Bccel_3277
KEGG: precorrin-6x reductase; TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK.
  
 
 0.983
Bccel_3280
PFAM: Cobalamin synthesis G domain-containing protein, cobalamin (vitamin B12) biosynthesis CbiG protein, Cobalamin biosynthesis central region domain-containing protein; KEGG: cobalamin (vitamin B12) biosynthesis protein CbiG.
  
 0.977
Bccel_3282
TIGRFAM: precorrin-2 C20-methyltransferase; KEGG: precorrin-2 C(20)-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Belongs to the precorrin methyltransferase family.
 
 
 0.976
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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