STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3301PFAM: PfkB domain protein; KEGG: PfkB domain-containing protein. (340 aa)    
Predicted Functional Partners:
Bccel_3302
KEGG: kdgA, KHG/KDPG aldolase KdgA; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.
 
 0.996
Bccel_0885
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; KEGG: Entner-Doudoroff aldolase; PFAM: KDPG and KHG aldolase.
 
 0.984
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.968
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
 0.862
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
 0.862
Bccel_3401
TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: ribulose-5-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.857
Bccel_4682
KEGG: Long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase and ligase, Xylose isomerase domain-containing protein TIM barrel, Domain of unknown function DUF4009.
  
 
 0.851
Bccel_1565
KEGG: IMP dehydrogenase/GMP reductase; PFAM: IMP dehydrogenase/GMP reductase, CBS domain containing protein.
  
 
 0.797
Bccel_2291
KEGG: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; SMART: AAA ATPase.
  
 
 0.791
Bccel_3304
KEGG: mannitol-1-phosphate/altronate dehydrogenase; PFAM: Mannitol dehydrogenase domain-containing protein, Mannitol dehydrogenase rossman domain-containing protein.
 
  
 0.788
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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