STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3356PFAM: Heavy metal transport/detoxification protein; KEGG: hypothetical protein. (644 aa)    
Predicted Functional Partners:
Bccel_3354
Hypothetical protein; KEGG: copper-translocating P-type ATPase.
 
 
 0.979
Bccel_3355
TIGRFAM: heavy metal translocating P-type ATPase, copper ion binding protein, copper-translocating P-type ATPase, ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: copper/silver-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein, Heavy metal transport/detoxification protein, Haloacid dehalogenase domain protein hydrolase.
 
 
0.977
Bccel_4660
TIGRFAM: heavy metal translocating P-type ATPase, ATPase, P-type (transporting), HAD superfamily, subfamily IC, cadmium-translocating P-type ATPase; KEGG: cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein, Haloacid dehalogenase domain protein hydrolase, Heavy metal transport/detoxification protein.
  
 
 0.934
Bccel_3357
PFAM: Protein of unknown function DUF2318, membrane; KEGG: hypothetical protein.
 
     0.858
Bccel_3350
KEGG: integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein, histidine kinase HAMP region domain protein, histidine kinase A domain protein.
 
     0.832
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.690
Bccel_3353
KEGG: copper ion binding protein; TIGRFAM: copper ion binding protein; PFAM: Heavy metal transport/detoxification protein.
 
     0.689
Bccel_3926
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: putative transcriptional regulator.
  
  
 0.677
Bccel_4614
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: transcriptional regulator.
  
  
 0.677
Bccel_4888
PFAM: Penicillinase repressor; KEGG: transcriptional repressor, copy family.
  
  
 0.677
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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