STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3357PFAM: Protein of unknown function DUF2318, membrane; KEGG: hypothetical protein. (173 aa)    
Predicted Functional Partners:
Bccel_3356
PFAM: Heavy metal transport/detoxification protein; KEGG: hypothetical protein.
 
     0.858
Bccel_2600
KEGG: flagellar hook-basal body protein; TIGRFAM: flagellar basal-body rod protein FlgG, flagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein, flagellar basal body rod protein.
    
   0.671
Bccel_2601
KEGG: flagellar hook-basal body protein; TIGRFAM: flagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein, flagellar basal body rod protein.
    
   0.671
Bccel_3350
KEGG: integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein, histidine kinase HAMP region domain protein, histidine kinase A domain protein.
 
     0.642
Bccel_3801
PFAM: Domain of unknown function DUF4098; KEGG: hypothetical protein.
  
     0.612
Bccel_4198
PFAM: GCN5-related N-acetyltransferase; KEGG: hypothetical protein.
  
     0.545
Bccel_1059
KEGG: Ig domain-containing protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin, APHP domain protein; SMART: Ig domain protein group 2 domain protein.
  
     0.534
Bccel_3358
PFAM: type II secretion system protein G.
       0.532
Bccel_3672
PFAM: cellulosome anchoring protein cohesin region; KEGG: cellulosome anchoring protein cohesin subunit.
  
     0.522
Bccel_5645
PFAM: S-layer domain-containing protein; KEGG: hypothetical protein.
  
     0.508
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.