STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3380Coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Coproporphyrinogen III oxidase; KEGG: coproporphyrinogen dehydrogenase; PFAM: Radical SAM domain protein. (505 aa)    
Predicted Functional Partners:
Bccel_3259
PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.796
Bccel_4596
PFAM: Flavodoxin domain; KEGG: hypothetical protein.
    
 0.792
Bccel_4883
NUDIX hydrolase; KEGG: hemN2, oxygen-independent coproporphyrinogen-III oxidase HemN; PFAM: NUDIX hydrolase, HemN domain protein, Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
  
 
0.782
Bccel_2062
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 
0.760
Bccel_3773
PFAM: Domain of unknown function DUF1934; KEGG: hypothetical protein.
  
    0.703
Bccel_3848
PFAM: amine oxidase; KEGG: amine oxidase.
    
 0.668
dtd
D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.
       0.667
argS
KEGG: argS, arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; HAMAP : Arginyl-tRNA synthetase.
   
    0.636
argS-2
KEGG: arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; HAMAP : Arginyl-tRNA synthetase.
   
    0.636
Bccel_3383
(p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
  
    0.628
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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