Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Bccel_3385PFAM: UPF0103/Mediator of ErbB2-driven cell motility-containing protein; KEGG: hypothetical protein. (319 aa)    
Predicted Functional Partners:
Bccel_3386
PFAM: alpha-2-macroglobulin domain protein 2, alpha-2-macroglobulin domain protein, alpha-2-macroglobulin; KEGG: hypothetical protein.
 
     0.941
Bccel_1472
KEGG: hypothetical protein; PFAM: Capsule synthesis protein, CapA; SMART: Capsule synthesis protein, CapA.
      0.903
Bccel_3547
PFAM: AMMECR1 domain protein; KEGG: hypothetical protein.
 
    0.763
Bccel_2116
PFAM: copper amine oxidase-like domain-containing protein, alpha-2-macroglobulin; KEGG: large extracellular alpha-helical protein.
 
     0.707
Bccel_3548
PFAM: Radical SAM domain protein; KEGG: radical SAM protein.
 
     0.667
Bccel_3546
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: hypothetical protein.
  
    0.631
Bccel_3070
PFAM: Uncharacterized protein family UPF0311; KEGG: cellulosome protein dockerin type I.
     
  0.625
Bccel_0179
SMART: Riboflavin kinase; TIGRFAM: riboflavin biosynthesis protein RibF; KEGG: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase, Riboflavin kinase.
   
   0.539
Bccel_2499
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
    
   0.519
Bccel_3384
KEGG: exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein, phosphoesterase DHHA1.
       0.496
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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