Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bccel_3391UPF0229 protein yeaH; TIGRFAM: sporulation protein YhbH; HAMAP : UPF0229 protein yeaH; KEGG: sporulation protein YhbH; PFAM: protein of unknown function DUF444; Belongs to the UPF0229 family. (413 aa)    
Predicted Functional Partners:
Bccel_3392
KEGG: putative Ser protein kinase; PFAM: PrkA AAA domain protein, PrkA serine kinase; SMART: PrkA AAA domain protein.
  
 0.996
Bccel_3390
PFAM: SpoVR family protein; KEGG: SpoVR family protein.
 
  
 0.992
Bccel_0049
KEGG: PhoH family protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc.
  
    0.651
Bccel_3590
PFAM: protein of unknown function DUF1508; KEGG: hypothetical protein.
   
  
 0.583
Bccel_4982
TIGRFAM: spore coat protein, CotS family; KEGG: CotS family spore coat protein.
   
  
 0.472
Bccel_3411
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: single-stranded DNA-binding protein.
   
    0.465
clpS
ATP-dependent Clp protease adapter protein clpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
  
   0.439
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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