Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_3404KEGG: protein serine/threonine phosphatase; PFAM: protein phosphatase 2C domain protein; SMART: protein phosphatase 2C domain protein. (244 aa)    
Predicted Functional Partners:
Bccel_3403
PFAM: protein kinase, PASTA domain containing protein; KEGG: serine/threonine protein kinase with PASTA sensor(s); SMART: serine/threonine protein kinase, PASTA domain containing protein.
 
 0.989
Bccel_2765
KEGG: serine/threonine protein kinase; PFAM: protein kinase; SMART: serine/threonine protein kinase.
 
 
 0.910
Bccel_3406
Sun protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. Belongs to the NusB family.
 
  
 0.903
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.863
Bccel_5735
KEGG: hypothetical protein; PFAM: protein kinase; SMART: serine/threonine protein kinase.
 
 
 0.860
Bccel_1998
PFAM: protein kinase; KEGG: Serine/threonine protein kinase fused to TPR repeats domain; SMART: serine/threonine protein kinase.
 
 0.856
Bccel_2307
PFAM: protein kinase, Ig domain protein group 2 domain protein; KEGG: serine/threonine protein kinase; SMART: serine/threonine protein kinase.
 
 
 0.853
Bccel_5722
PFAM: protein kinase, NHL repeat containing protein; KEGG: Serine/threonine protein kinase fused to TPR repeats domain; SMART: serine/threonine protein kinase.
 
 
 0.853
Bccel_5264
PFAM: cell cycle protein; KEGG: cell division membrane protein; Belongs to the SEDS family.
   
 0.788
rsgA
Ribosome biogenesis GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
 
  
 0.781
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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