STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3415PFAM: 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; KEGG: 4Fe-4S ferredoxin. (324 aa)    
Predicted Functional Partners:
Bccel_3417
TIGRFAM: CoA-substrate-specific enzyme activase; KEGG: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type.
 
     0.870
Bccel_3416
PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: 2-hydroxyglutaryl-CoA dehydratase subunit D.
 
     0.853
Bccel_3413
PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: 2-hydroxyglutaryl-CoA dehydratase subunit D.
 
     0.849
Bccel_3418
Hypothetical protein.
       0.773
Bccel_3414
Hypothetical protein.
       0.762
Bccel_3419
TIGRFAM: amino acid adenylation domain protein; KEGG: amino acid adenylation domain-containing protein; PFAM: AMP-dependent synthetase and ligase, Male sterility domain-containing protein, acyl carrier protein familyprotein, Non-ribosomal peptide synthetase, condensation domain protein; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.631
Bccel_3420
KEGG: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
       0.529
Bccel_4671
PFAM: Polyphosphate kinase-2-related; KEGG: hypothetical protein.
  
    0.453
Bccel_3691
PFAM: 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; KEGG: 4Fe-4S ferredoxin.
  
  
 0.449
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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